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Prediction and estimation of effective population size Heredity

www.nature.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Effective population size (Ne) is a key parameter in population genetics It has important applications in evolutionary biology  - Information from www.nature.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.nature.com/articles/hdy201643

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SNeP: a tool to estimate trends in recent effective population

www.frontiersin.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Effective population size (Ne) is an important genetic parameter that estimates the amount of genetic drift in a population and has been  - Information from www.frontiersin.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.frontiersin.org/articles/10.3389/fgene.2015.00109/full

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Estimating effective population size using RADseq Wiley

onlinelibrary.wiley.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Abstract Effective population size (Ne) is a key parameter of population genetics However Ne remains challenging to estimate - Information from onlinelibrary.wiley.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://onlinelibrary.wiley.com/doi/full/10.1002/ece3.6016

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Package NEff CRAN

cran.r-project.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

This individual based model uses demographic parameters of a population to calculate annual effective sizes and effective population sizes (per  - Information from cran.r-project.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://cran.r-project.org/web/packages/NEff/NEff.pdf

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Estimation of effective population sizes from data on genetic

royalsocietypublishing.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Currently the most widely used approaches to estimating the effective sizes of natural populations are those based on the genetic properties of  - Information from royalsocietypublishing.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://royalsocietypublishing.org/doi/10.1098/rstb.2005.1682

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Temporal Estimates of Effective Population Size in Species

www.ncbi.nlm.nih.gov

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The standard temporal method for estimating effective population size population used to estimate Ne in the temporal method of Jorde and Ryman (1995)  - Information from www.ncbi.nlm.nih.gov

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1775005/

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9 Effective Population Size Applied Population Genetics

dyerlab.github.io

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

A textbook for the use of R in spatial genetic data analysis There are several ways to estimate a genetic effective population size two of which we  - Information from dyerlab.github.io

Information accuracy 100%
Estimate effective population size in r information was found here: https://dyerlab.github.io/applied_population_genetics/effective-population-size.html

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Maximum likelihood estimation of effective population size

rdrr.io

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The concept of effective population size is imporatnt in population genetics This function estimates the effective population size N_e from  - Information from rdrr.io

Information accuracy 100%
Estimate effective population size in r information was found here: https://rdrr.io/cran/NB/man/NB.estimator.html

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Lect 7 Eff pop size Ne

www.uwyo.edu

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

If were lucky enough to have either a good estimate of effective population size (from a demographic angle) or of the mutation rate (µ)  - Information from www.uwyo.edu

Information accuracy 100%
Estimate effective population size in r information was found here: http://www.uwyo.edu/dbmcd/molmark/lect07/lect7.html

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Estimating Effective Population Size from Temporally Spaced

www.genetics.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

An R package “NB” is now available for download to implement the method described in this article KEYWORDS effective population size genetic drift  - Information from www.genetics.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.genetics.org/content/genetics/200/1/285.full.pdf

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ThetaMater: Bayesian estimation of population size parameter

academic.oup.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

AbstractSummary We describe ThetaMater an open source R package comprising a suite of functions for efficient and scalable Bayesian  - Information from academic.oup.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://academic.oup.com/bioinformatics/article/34/6/1072/4670681

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Article Accurate Nonparametric Estimation of Recent Effective

www.sciencedirect.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

We present a nonparametric method for accurately estimating recent effective population size by using inferred long segments of identity by  - Information from www.sciencedirect.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.sciencedirect.com/science/article/pii/S0002929715002888

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Effective population size/adult population size ratios in wildlife

www.cambridge.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Estimation of effective population size of grizzly bears by computer simulation Borlase S C Loebel D A Frankham R Nurthen R K Briscoe  - Information from www.cambridge.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.cambridge.org/core/journals/genetics-research/article/effective-population-sizeadult-population-size-ratios-in-wildlife-a-review/59D48CF3CCD19ECE47163795F6EEA89E

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Estimating the Effective Population Size of Conserved jstor

www.jstor.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Department of Biology University of California Riverside CA 92521 USA DIANE R ELAM Department of Botany and Plant Sciences University of California - Information from www.jstor.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.jstor.org/stable/2386732

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Estimation of effective population size in continuously

www.fs.usda.gov

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Use of genetic methods to estimate effective population size (Ne) is rapidly methods for estimating effective size to continuously distributed populations - Information from www.fs.usda.gov

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.fs.usda.gov/treesearch/pubs/43825

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Estimating virus effective population size and selection PLOS

journals.plos.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Finally the sequences corresponding to each PVY variant were determined with the help of agrep function in R software [38] and sequence  - Information from journals.plos.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1006702&type=printable

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Estimation of linkage disequilibrium and BMC Genomic Data

bmcgenomdata.biomedcentral.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Estimating the effective population size (N e ) [8] is a useful way to It is possible to estimate N e from molecular data using the r 2 - Information from bmcgenomdata.biomedcentral.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://bmcgenomdata.biomedcentral.com/articles/10.1186/s12863-017-0534-2

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Effective population size Wikipedia

en.wikipedia.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Today the effective population size is usually estimated empirically with respect to the sojourn or coalescence time estimated as the withinspecies  - Information from en.wikipedia.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://en.wikipedia.org/wiki/Effective_population_size

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Estimation of census and effective population sizes USDA

www.fs.fed.us

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Population census size (NC) and effective population size and multiplesample Bayesian estimators (BAYESN an R - Information from www.fs.fed.us

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.fs.fed.us/rm/pubs_other/rmrs_2010_luikart_g001.pdf

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Loss of microsatellite diversity and low effective population

www.pnas.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Effective population sizes estimated both from the decline in Pearsons correlation coefficient (r) of a linear regression of Ĥe and N̂a against year  - Information from www.pnas.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.pnas.org/content/99/18/11742

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Estimation of Linkage Disequilibrium and Effective Population

www.mdpi.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Moreover r2 values were used to calculate historical and contemporary effective population size (Ne) in each breed Average r2 was similar in Calvana and  - Information from www.mdpi.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.mdpi.com/2076-2615/10/6/1034/htm

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Horseshoebased Bayesian nonparametric estimation of

arxiv.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Horseshoebased Bayesian nonparametric estimation of effective population size trajectories Authors:James R Faulkner Andrew F Magee Beth  - Information from arxiv.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://arxiv.org/abs/1808.04401

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Coancestry rates estimate of effective population size for

link.springer.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The restricted individual coancestry rate model for estimating effective population size (NeR) considers the same formula with changes in  - Information from link.springer.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://link.springer.com/article/10.1007/s12686-019-01092-0

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How Can I Estimate Effective Population Size From Linkage

www.biostars.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Waples (1991) used N_e 1/3(r^2 (1/s)) where s is the harmonic mean of the sample size England et al (2006) showed that this estimator is biased for  - Information from www.biostars.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.biostars.org/p/57829/

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Neon: An R Package to Estimate Human Effective Population

www.hilarispublisher.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The NeON package enables to accommodate variable numbers of individuals populations and genetic markers allowing analyzing those using standard personal  - Information from www.hilarispublisher.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.hilarispublisher.com/open-access/neon-an-r-package-to-estimate-human-effective-population-size-and-divergence-jcsb.1000168.pdf

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A bias correction for estimates of effective population size

digitalcommons.unl.edu

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

provides a means of estimating effective population size (Ne) from a single sample but this method has others and use the Burrows method to compute ˆr - Information from digitalcommons.unl.edu

Information accuracy 100%
Estimate effective population size in r information was found here: https://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1440&context=usdeptcommercepub

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(PDF) Estimating effective population size from linkage

www.researchgate.net

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Estimating effective population size from linkage disequilibrium: severe bias in small samples Phillip R England - Information from www.researchgate.net

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.researchgate.net/publication/225643794_Estimating_effective_population_size_from_linkage_disequilibrium_Severe_bias_in_small_samples

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Inference of Historical PopulationSize Changes with Allele

www.g3journal.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The goal here is to use these principles to determine the longterm series of effective population sizes most compatible with the SFS  - Information from www.g3journal.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.g3journal.org/content/10/1/211

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Can effective population size estimates be used to monitor

www.vwt.org.uk

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Abstract Molecular approaches to calculate effective population size estimates (Ne) are in creasingly used as an alternative to longterm  - Information from www.vwt.org.uk

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.vwt.org.uk/wp-content/uploads/2021/03/Wright-2021-effective-population-size-esimates-to-monitor-woodland-bats.pdf

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NeEstimator software Molecular Fisheries Laboratory

www.molecularfisherieslaboratory.com.au

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The NeEstimator software estimates genetic effective population sizes (Ne) from an option to estimate r between loci on different chromosomes or linkage  - Information from www.molecularfisherieslaboratory.com.au

Information accuracy 100%
Estimate effective population size in r information was found here: http://www.molecularfisherieslaboratory.com.au/neestimator-software/

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Software that allows to infer population genetic parameters

www.sc.fsu.edu

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

MISAT is a program for estimating the likelihood surface for ? (4 times the effective population size times the mutation rate) for microsatellite data Two  - Information from www.sc.fsu.edu

Information accuracy 100%
Estimate effective population size in r information was found here: http://www.sc.fsu.edu/~beerli/popgensoftware.html

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Prediction and estimation of effective population size CORE

core.ac.uk

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

in estimating the effective size of natural populations from genetic data lag In the case of partial selfing (or partial fullsib mating) the term r - Information from core.ac.uk

Information accuracy 100%
Estimate effective population size in r information was found here: https://core.ac.uk/download/pdf/79515845.pdf

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Effective Population Size and Signatures of Selection Using

journals.sagepub.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Past effective population size was estimated chromosomewise using pairwise SNP r2 with intermarker distance categories (Table 4) - Information from journals.sagepub.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://journals.sagepub.com/doi/10.4137/EBO.S24359

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Estimating effective population size from linkage disequilibrium

citeseerx.ist.psu.edu

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Phillip R England1* JeanMarie Cornuet2 Pierre Berthier3 Key words: effective population size linkage disequilibrium sampling bias Abstract - Information from citeseerx.ist.psu.edu

Information accuracy 100%
Estimate effective population size in r information was found here: https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.570.2866&rep=rep1&type=pdf

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Singlesample estimation of effective population size in

www.journals.uchicago.edu

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

AbstractHines emerald dragonfly (Somatochlora hineana) is the only odonate on the US Endangered Species list It prefers discrete fenandwetmeadow  - Information from www.journals.uchicago.edu

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.journals.uchicago.edu/doi/10.1086/682073

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Effects of Overlapping Generations on Linkage Disequilibrium

www.umt.edu

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

estimate effective population size (Wang 2005 Leberg 2005 Luikart et al most perfectly linear (r 0992) with slope that did not differ - Information from www.umt.edu

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.umt.edu/ces/conferences/congen/congen2019/images/all%20together/waples_1st%20lecture%20effects%20of%20overlapping%20generations%20on%20linkage%20disequilibrium%20estimates%20of%20effective%20population%20size.pdf

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4 Genetic Drift and Effective Population Size

samples.jbpub.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

We can use the probability matrix approach to calculate the distribu tion of allele frequencies over time for finite populations of different sizes As an  - Information from samples.jbpub.com

Information accuracy 100%
Estimate effective population size in r information was found here: http://samples.jbpub.com/9780763757373/57373_ch04_final.pdf

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Understanding and Estimating Effective Population Size for

burfordreiskind.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

These diversity indices reflect longterm or Conservation Biology Volume 25 No 3 2011 Page 5 440 Applying Effective Population Size - Information from burfordreiskind.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://burfordreiskind.com/wp-content/uploads/hare_etal_conbio2011.pdf

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Number of Censuses Required for Demographic Estimation of

www.isleroyalewolf.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Abstract: Adequate population viability assessment may require estimation of effective population size (Ne) Butfailure to take into account the effect of  - Information from www.isleroyalewolf.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.isleroyalewolf.org/sites/default/files/tech_pubs_files/VucetichWaite1998CB.pdf

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GONe: Software for estimating effective population size in

pubs.er.usgs.gov

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

GONe is a user‐friendly Windows‐based program for estimating effective size (Ne) in populations with overlapping generations - Information from pubs.er.usgs.gov

Information accuracy 100%
Estimate effective population size in r information was found here: https://pubs.er.usgs.gov/publication/70035463

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Genetic Methods for Estimating the Effective Size of Cetacean

www.nwfsc.noaa.gov

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Some indirect (genetic) methods for estimating effective population size (N) The correlation of allele frequencies at a pair of loci is defined as r - Information from www.nwfsc.noaa.gov

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.nwfsc.noaa.gov/assets/4/6881_09172014_163439_Waples.1991-RepIntWhalCom.pdf

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Recent human effective population size estimated from

genome.cshlp.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

estimate of effective population size adjusted for SNP ascertainment bias variance of an estimate of a correlation coefficient r with sample size n  - Information from genome.cshlp.org

Information accuracy 100%
Estimate effective population size in r information was found here: http://genome.cshlp.org/content/17/4/520.full.pdf

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Evaluating methods for estimating local effective population

datadryad.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Effective population size is a fundamental parameter in population genetics evolutionary biology and conservation biology  - Information from datadryad.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://datadryad.org/stash/dataset/doi:10.5061/dryad.3r651

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Comparative Evaluation of a New Effective Population Size

uas.alaska.edu

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

We describe and evaluate a new estimator of the effective population size (Ne) a critical parameter the statistical package R (R Development Core Team - Information from uas.alaska.edu

Information accuracy 100%
Estimate effective population size in r information was found here: https://uas.alaska.edu/dir/papers/datallmon/Tallmonetal_Ne.pdf

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Effective population size of Chinook salmon in Yukon and

www.fws.gov

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Estimating the effective population size J Hered 81:277289 Waples R 2002 Effective size of fluctuating salmon populations Genetics 161:783791 - Information from www.fws.gov

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.fws.gov/r7/fisheries/genetics/pdf/40_rf_2005_OlsenMillerHarperWenburg_45240%20Final%20Report_Full%20.pdf

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Accurate Estimation of Effective Population Size in the Korean

www.animbiosci.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

In many genomic methodologies the effective population size (Ne) is Estimating the r2 of all pairwise per chromosome using highdensity SNP chips is  - Information from www.animbiosci.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.animbiosci.org/journal/view.php?number=4618

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Quantifying the relationship between genetic diversity eLife

elifesciences.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

It has long been appreciated that effective population sizes are the estimated diversity in the absence of linked selection ( π 0 ) R - Information from elifesciences.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://elifesciences.org/articles/67509

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Robust estimates of a high Ne/N ratio in a top marine predator

www.science.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Because effective size is challenging to estimate in natural populations We calculated mean r2 and estimated effective size using the program LDNe (35)  - Information from www.science.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.science.org/doi/10.1126/sciadv.aar7759

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individual based population model RDocumentation

www.rdocumentation.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

population is an individual based model It uses demographic parameter of a population to calculate annual effective sizes and effective population sizes - Information from www.rdocumentation.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.rdocumentation.org/packages/NEff/versions/1.0/topics/population

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Estimation of Effective Population Size of HIV1 Within a Host

ftp

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

We then estimate the effective size of the HIV1 population within nine hosts If we as the evolutionary rate r (number of substitutions per - Information from ftp

Information accuracy 100%
Estimate effective population size in r information was found here: http://ftp//statgen.ncsu.edu/pub/thorne/mypapers/seogenetics.pdf&ved=2ahUKEwiNl4eridr0AhVFSTABHYDHAF4QFnoFCMEBEAE

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Estimating effective population size of large marine

archimer.ifremer.fr

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Estimating effective population size of large marine populations is it feasible? Marandel Florianne 1 * Lorance Pascal 1 Berthelé Olivier 1 Trenkel Verena  - Information from archimer.ifremer.fr

Information accuracy 100%
Estimate effective population size in r information was found here: https://archimer.ifremer.fr/doc/00470/58162/60678.pdf

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Effective population size/adult population size ratios in wildlife

www.researchonline.mq.edu.au

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

There were no significant effects on the ratio of high v low fecundity demographic r genetic methods of estimation or of overlapping v nonoverlapping  - Information from www.researchonline.mq.edu.au

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.researchonline.mq.edu.au/vital/access/services/Download/mq:13249/DS01

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Effective population size and patterns of molecular evolution

dna.ac

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

If the mutation rate is known either from a direct experimen tal estimate or from data on DNA sequence divergence between species with known  - Information from dna.ac

Information accuracy 100%
Estimate effective population size in r information was found here: http://dna.ac/filogeografia/PDFs/popgen/Charlesworth_09_Effective_Population_Size.pdf

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Estimation of the variance effective population size in age

www.su.se

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

There exist a number of methods for estimating Ne in real pop Effective population sizes calculated based on allele fre - Information from www.su.se

Information accuracy 100%
Estimate effective population size in r information was found here: http://www.su.se/polopoly_fs/1.279637.1461150349!/menu/standard/file/OlsssonHossjer_EstVarEffSizeAgeStr_TPB_2015.pdf

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chollenbeck/LinkNe: Estimates effective population size using

github.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

LinkNe Overview LinkNe is a program for estimating effective population size from LD at loci with known linkage relationships A detailed description of  - Information from github.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://github.com/chollenbeck/LinkNe

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ShortTerm Genetic Changes: Evaluating Effective Population

www2.bio.ulaval.ca

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

ABSTRACT The effective population size (Ne) is notoriously difficult to accurately estimate in wild populations as it is influenced by - Information from www2.bio.ulaval.ca

Information accuracy 100%
Estimate effective population size in r information was found here: http://www2.bio.ulaval.ca/louisbernatchez/pdf/(260)%20Serbezov_Genetics_12.pdf

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Effective Population Size: Definition Calculation & Example

study.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

By understanding effective population sizes scientists can predict how quickly a population of animals will lose genetic variation  - Information from study.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://study.com/academy/lesson/effective-population-size-definition-calculation-example.html

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Sample Size Calculation with R

med.und.edu

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

You are interested in determining if the size of a city (in square miles) can predict the population of the city (in # of individuals) • Guessed a large effect - Information from med.und.edu

Information accuracy 100%
Estimate effective population size in r information was found here: https://med.und.edu/daccota/_files/pdfs/berdc_resource_pdfs/sample_size_r_module.pdf

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Estimate initial population size for single or multiple R

www.rforge.net

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

For single census data the initial population size (N) is estimated from the number of marked animals from a first sample (M) number of captured animals  - Information from www.rforge.net

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.rforge.net/doc/packages/FSA/mrClosed.html

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Effective reproduction number estimation Rbloggers

www.r-bloggers.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

However as intervention measures are put in place and as a certain proportion of the population gains immunity interest switches to knowing  - Information from www.r-bloggers.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.r-bloggers.com/2020/04/effective-reproduction-number-estimation/

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How to Calculate Effective Population Size YouTube

www.youtube.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

- Information from www.youtube.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.youtube.com/watch?v=ltN-3iHlbWo

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Coronavirus Pandemic (COVID19) Statistics and Research

ourworldindata.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Compare the number of deaths from all causes during COVID19 to the years before the countries that are most successful in making progress against it - Information from ourworldindata.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://ourworldindata.org/coronavirus

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Tree Based Algorithms Implementation In Python & R

www.analyticsvidhya.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Above Xbar is mean of the values X is actual and n is number of values Steps to calculate Variance: Calculate variance for each node - Information from www.analyticsvidhya.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.analyticsvidhya.com/blog/2016/04/tree-based-algorithms-complete-tutorial-scratch-in-python/

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Exploring Sample Size and Confidence in R Amazon AWS

rstudio-pubs-static.s3.amazonaws.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Since we dont actually know the population SD well estimate this with the sample SD instead In R this is sd(x)/sqrt(length(x)) where x  - Information from rstudio-pubs-static.s3.amazonaws.com

Information accuracy 100%
Estimate effective population size in r information was found here: http://rstudio-pubs-static.s3.amazonaws.com/453312_f4d417946be74fa48b69be9f51b83fec.html

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Modeling Demographic Processes in Marked Populations

books.google.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Lande R Barrowclough GF (1987) Effective population size P (2005) Genetic approaches for estimating the effective population size of populations - Information from books.google.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://books.google.com/books?id=ZNWn5dskZrYC&pg=PA319&lpg=PA319&dq=estimate+effective+population+size+in+r&source=bl&ots=GfKq2NY0mj&sig=ACfU3U3MSho1b4WAaff3KbvZkRIsZugB4g&hl=en&sa=X&ved=2ahUKEwiNl4eridr0AhVFSTABHYDHAF4Q6AF6BQi6AhAD

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Handbook of Statistical Genomics Page 499 Google Books Result

books.google.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Vitalis R and Couvet D (2001) Estimation of effective population size and migration rate from one and twolocus identity measures - Information from books.google.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://books.google.com/books?id=3kugDwAAQBAJ&pg=PA499&lpg=PA499&dq=estimate+effective+population+size+in+r&source=bl&ots=kTcr9V7TJa&sig=ACfU3U3I56PVyn05dpIFykd0cooZOJO80Q&hl=en&sa=X&ved=2ahUKEwiNl4eridr0AhVFSTABHYDHAF4Q6AF6BQi5AhAD

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How to calculate sample size in 5 steps Statsols

www.statsols.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

- Information from www.statsols.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.statsols.com/how-to-use-a-sample-size-calculator

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Comparative Effectiveness of BNT162b2 and mRNA1273

www.nejm.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

We estimated risks using the Kaplan–Meier estimator The excess number of events per 1000 persons for BNT162b2 as compared with  - Information from www.nejm.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.nejm.org/doi/full/10.1056/NEJMoa2115463

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The pandemics true death toll The Economist

www.economist.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Our daily estimate of excess deaths around the world Graphic detail This number is the gap between how many people died in a given  - Information from www.economist.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.economist.com/graphic-detail/coronavirus-excess-deaths-estimates

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Latinos and the Changing Face of America PRB Population

www.prb.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The number of Latinos in the United States more than doubled between 1980 and about the Latino population and the groups within it to more effectively - Information from www.prb.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.prb.org/resources/latinos-and-the-changing-face-of-america/

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Income Limits HUD USER

www.huduser.gov

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The Department of Housing and Urban Development (HUD) sets income limits that determine eligibility for assisted housing Effective April 1 2021 - Information from www.huduser.gov

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.huduser.gov/portal/datasets/il.html

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Use of Masks to Control the Spread of SARSCoV2 CDC

www.cdc.gov

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The relative filtration effectiveness of various masks has varied widely State population Mandatory mask wearing in public spaces Estimated case rate  - Information from www.cdc.gov

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.cdc.gov/coronavirus/2019-ncov/science/science-briefs/masking-science-sars-cov2.html

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Health Insurance Marketplace Calculator KFF

www.kff.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Estimate Health Insurance Premiums and Subsidies for Health Insurance Number of adults (21 to 64) enrolling in Marketplace coverage? - Information from www.kff.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.kff.org/interactive/subsidy-calculator/

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• Statista The Statistics Portal for Market Data Market

www.statista.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Find statistics consumer survey results and industry studies from over 22500 sources on over 60000 topics on the internets leading statistics database - Information from www.statista.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.statista.com/

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Covid19 news: UK will see large wave of omicron scientist says

www.newscientist.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The overall covid19 numbers in the UK show cases rising 8 per cent says if the characteristics of omicron estimated from South Africa apply in the UK  - Information from www.newscientist.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.newscientist.com/article/2237475-covid-19-news-uk-will-see-large-wave-of-omicron-scientist-says/

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Policy Responses to COVID19 International Monetary Fund

www.imf.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The authorities aim to vaccinate 60 percent of the population Oxfam estimates that the number of people on the brink of famine in Afghanistan has risen  - Information from www.imf.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.imf.org/en/Topics/imf-and-covid19/Policy-Responses-to-COVID-19

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Increased risk of SARSCoV2 reinfection medRxiv

www.medrxiv.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The estimated effective reproduction number in population and the growing number of individuals eligible for reinfection through time - Information from www.medrxiv.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.medrxiv.org/content/10.1101/2021.11.11.21266068v2.full.pdf

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random — Generate pseudorandom numbers — Python 310

docs.python.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

This is especially fast and space efficient for sampling from a large population: sample(range(10000000) k60) If the sample size is larger than the  - Information from docs.python.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://docs.python.org/3/library/random.html

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The state of the worlds land and water resources for food and

www.fao.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Current projections indicate that world population will increase from 69 such agricultural growth is strongest in developing countries where the  - Information from www.fao.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.fao.org/3/i1688e/i1688e.pdf

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Global estimates of paediatric tuberculosis incidence in 2013

www.thelancet.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

We aimed to estimate paediatric tuberculosis incidence and absolute incidence by population size for each age group country and year - Information from www.thelancet.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.thelancet.com/journals/langlo/article/PIIS2214-109X(21)00462-9/fulltext

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Study to Describe the Safety Tolerability Immunogenicity and

clinicaltrials.gov

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Intermediatesize Population: Allows more than one patient (but generally fewer to determine the effect of an intervention/treatment on participants - Information from clinicaltrials.gov

Information accuracy 100%
Estimate effective population size in r information was found here: https://clinicaltrials.gov/ct2/show/NCT04368728

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Greenbook chapter 14a GOVUK

assets.publishing.service.gov.uk

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

reproduction number [R] were initially between 2 and 3 although a Table 1: UK Infection fatality ratio and estimated total numbers of  - Information from assets.publishing.service.gov.uk

Information accuracy 100%
Estimate effective population size in r information was found here: https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/1037340/Greenbook-chapter-14a-30Nov21.pdf

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Yorkshire pig size Indonesian Gas Society

bonus.indonesiangassociety.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Extent of linkage disequilibrium and effective population size in Finish than Yorkshire placentae however Meishan Calculate the age of the pig - Information from bonus.indonesiangassociety.com

Information accuracy 100%
Estimate effective population size in r information was found here: http://bonus.indonesiangassociety.com/ov6jd/yorkshire-pig-size.html

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Diversity Measures R Functions

rfunctions.blogspot.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

To calculate these abundancebased richness diversity estimators we can use "estimateR" function We will get the observed number of species in  - Information from rfunctions.blogspot.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://rfunctions.blogspot.com/search/label/Diversity%20Measures

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Water use calculator utah

ghagoa.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Daily Use (gal/day) (N × W) × (1 R) (Where N Number of daily units washed processed Estimating the Total Cost of Your Residential Water Well - Information from ghagoa.org

Information accuracy 100%
Estimate effective population size in r information was found here: http://ghagoa.org/hnsz7ps/water-use-calculator-utah.html

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COVID19 Cases and Deaths by Vaccination Status

dshs.texas.gov

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

To determine the effects of vaccination on COVID19 cases and deaths in the United States are highly effective at protecting people from  - Information from dshs.texas.gov

Information accuracy 100%
Estimate effective population size in r information was found here: https://dshs.texas.gov/immunize/covid19/data/vaccination-status.aspx

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Sampling Size of Population Mean R Tutorial

www.r-tutor.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

The formula below provide the sample size needed under the requirement of population mean interval estimate at (1 −α) confidence level margin of error E and  - Information from www.r-tutor.com

Information accuracy 100%
Estimate effective population size in r information was found here: http://www.r-tutor.com/elementary-statistics/interval-estimation/sampling-size-population-mean

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R rate in Omicron epicentre in South Africa soars from below

www.dailymail.co.uk

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Public Health Officials in Guateng province estimate that the R value a cases compared to its population size than both the UK and US - Information from www.dailymail.co.uk

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.dailymail.co.uk/news/article-10270947/R-rate-Omicron-stricken-South-Africa-soared-one-three-week.html

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The Incoming Influenza Season — China the United Kingdom

weekly.chinacdc.cn

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

School of Population Medicine and Public Health Chinese Academy of Influenza vaccination is one of the most effective measures in  - Information from weekly.chinacdc.cn

Information accuracy 100%
Estimate effective population size in r information was found here: http://weekly.chinacdc.cn/en/article/doi/10.46234/ccdcw2021.253

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Prevention of Dental Caries in Children Younger Than 5 Years

www.uspreventiveservicestaskforce.org

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Population Recommendation Grade Children younger than 5 years The USPSTF recommends that primary care clinicians prescribe oral fluoride  - Information from www.uspreventiveservicestaskforce.org

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.uspreventiveservicestaskforce.org/uspstf/recommendation/prevention-of-dental-caries-in-children-younger-than-age-5-years-screening-and-interventions1

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Advances in Farm Animal Genomic Resources

books.google.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

GenABEL: an R library for genomewide association analysis Estimation of historical effective population size using linkage disequilibria with marker  - Information from books.google.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://books.google.com/books?id=A46-DAAAQBAJ&pg=PA176&lpg=PA176&dq=estimate+effective+population+size+in+r&source=bl&ots=4-TW6mg6gd&sig=ACfU3U3E2sEsc1xDng0R96ZCxdr3lkoFJg&hl=en&sa=X&ved=2ahUKEwiNl4eridr0AhVFSTABHYDHAF4Q6AF6BQisAhAD

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Elapsed time since BNT162b2 vaccine and risk of SARSCoV2

www.bmj.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Factors not considered directly were household size population Lastly the study was designed to estimate the effect of the time  - Information from www.bmj.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.bmj.com/content/375/bmj-2021-067873

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Population Viability Analysis Page 167 Google Books Result

books.google.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Steven R Beissinger Dale R McCullough Estimation of effective population size from data on linkage disequilibrium Genetical Research 38 : 209216 - Information from books.google.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://books.google.com/books?id=lPJ6gXitdLcC&pg=PA167&lpg=PA167&dq=estimate+effective+population+size+in+r&source=bl&ots=CgDOqw1qB6&sig=ACfU3U0DmBiSzzDfeiC_NRaah_9uJ7SNxg&hl=en&sa=X&ved=2ahUKEwiNl4eridr0AhVFSTABHYDHAF4Q6AF6BQiuAhAD

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Prescribed medicines review: summary GOVUK

www.gov.uk

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

antidepressants 73 million people (17% of the adult population) A longerterm increase in annual prescription numbers for zdrugs  - Information from www.gov.uk

Information accuracy 100%
Estimate effective population size in r information was found here: https://www.gov.uk/government/publications/prescribed-medicines-review-report/prescribed-medicines-review-summary

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Proposed Virginia maps put risingstar House Democrats at risk

thehill.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

Bob Goods (R) district would lose areas of Northern Virginia and be competitive — the special masters estimate that the Democratic vote  - Information from thehill.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://thehill.com/homenews/campaign/585084-proposed-virginia-maps-put-rising-star-house-democrats-at-risk

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Rapid Antigen Tests for Voluntary Screen Testing Ontario

covid19-sciencetable.ca

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

If the effective reproduction number (Rt) is consistently above 125 or if Rt is around 1 and the rate in a Public Health Unit (or other  - Information from covid19-sciencetable.ca

Information accuracy 100%
Estimate effective population size in r information was found here: https://covid19-sciencetable.ca/sciencebrief/rapid-antigen-tests-for-voluntary-screen-testing/

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How to calculate the effective population size ($N_e$) with

biology.stackexchange.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

There are many different ways to do this depending on what assumptions you make on eg stable age structure distribution of offspring haploidy/diploidy  - Information from biology.stackexchange.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://biology.stackexchange.com/questions/15746/how-to-calculate-the-effective-population-size-n-e-with-overlapping-generati

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A sample size calculator function for R 2657 Productions News

news.mrdwab.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

However try as I might I couldnt find how to do a simple sample size calculation in R if I knew for instance the size of the population I wanted to sample  - Information from news.mrdwab.com

Information accuracy 100%
Estimate effective population size in r information was found here: http://news.mrdwab.com/post/sample-size-calculator/

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Ecology Page 267 Google Books Result

books.google.com

Author: openj-gate.com ~ Tags: Estimate, effective, population, size, in, r ~ Date: 2022/06/22

It is concluded that the most effective test all responsibility for any errors in the Ecology 34 : 741757 of estimating population size from capture  - Information from books.google.com

Information accuracy 100%
Estimate effective population size in r information was found here: https://books.google.com/books?id=hhEuAAAAMAAJ&pg=PA267&lpg=PA267&dq=estimate+effective+population+size+in+r&source=bl&ots=K_SkqS2uDL&sig=ACfU3U3RqgaoMwZsByd1bppJQqmAV9kZEQ&hl=en&sa=X&ved=2ahUKEwiNl4eridr0AhVFSTABHYDHAF4Q6AF6BQi4AhAD

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